FATCAT - Pairwise Alignment
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Alignment mode:
flexible
rigid
(when rigid is selected, FATCAT is forced to run rigid comparison)
Enter the 1st structure
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Upload PDB file:
Chain:
Provide PDB code:
Chain:
Provide SCOP domain code:
Enter the 2nd structure
Enter a name for your structure:
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Upload PDB file:
Chain:
Provide PDB code:
Chain:
Provide SCOP domain code:
You can either upload local PDB files or simply provide PDB codes (eg. 1abo) or SCOP domain code (eg. d1mt0a_)
FATCAT server will automatically download the PDB files from
RCSB
when PDB codes are provided or from
SCOP
if domain codes are provided
If your PDB has more than one chain AND you do not want to use the 1st chain, please define the Chain; otherwise, the 1st chain will be used
Type in "zero" instead of "0" for chain 0; the server will not recognize 0
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